Monopoles for pp* Transitions and the Ground State in Amidesa


Atom
x (A)b
y (A)b
z (A)b
NV1c
NV2c
G. S.c,d
C1
0.0
1.0806
0.0
-1.1211
1.4469
1.0496
0.0
-1.0806
0.0
-1.1211
1.4469
1.0496
O2
0.0
0.7737
1.23
-0.0130
-0.7586
-1.1181
0.0
-0.7737
1.23
-0.0130
-0.7586
-1.1181
N3
1.081
0.9813
-0.757
1.1341
-0.6883
0.0705
1.081
-0.9813
-0.757
1.1341
-0.6883
0.0705
1.081
0.0
-0.757
 
 
-1.3
H4
1.046
0.0
-1.757
 
 
1.3

a The origin is at the carbonyl carbon. The z axis is along the carbonyl bond with O in positive direction. The x-axis is in-plane and directed such that the N has a positive x coordinate.

b Monopole positions relative to the atomic centers (R. W. Woody, J. Chem. Phys. 49, 4797-4806 (1968)).

cMonopole charges in 10-10 esu. Transition moments for secondary amide group in N-acetylglycine (L. B. Clark, J. Am. Chem. Soc., 117, 7974-7806 (1968)).

d These are the ground-state permanent monopoles for secondary amide groups (R. W. Woody and I. Tinoco, Jr., J. Chem. Phys. 47, 4927-4945 (1967)). For tertiary (Pro) amides, the p monopoles are the same, but the two in-plane s monopoles are set to zero.



Transition Parameters for pp* Transitions in the Amide Groupa


Transition
E (eV)b
Ñx (A-1)b
Ñz (A-1)b
(r x Ñ)y(BM)
Bandwidth (nm)
NV1
6.5255
0.4416
-0.3092
0
11.3
NV2
8.9275
-0.3663
-0.2031
0
7.2
a Because of the plane of symmetry, the y-component of the Ñ matrix element and the x, z components of the (r x Ñ) matrix element are zero.

b See footnote c in previous Table.



Monopoles for np* Transitions in Amidesa


Atom
x (A)b
y (A)b
z (A)b
np*c
np*-NV1c
np*-NV2c
O2
0.6064
0.6064
0.0
-0.4761
0.4171
-0.3720
0.6064
-0.6064
0.0
0.4761
-0.4171
0.3720
-0.6064
-0.6064
0.0
-0.4761
0.4171
-0.3720
-0.6064
0.6064
0.0
0.4761
-0.4171
0.3720
C1
0.8470
0.8470
0.0
-0.1318
0.0
0.0
0.8470
-0.8470
0.0
0.1318
0.0
0.0
-0.8470
-0.8470
0.0
-0.1318
0.0
0.0
-0.8470
0.8470
0.0
0.1318
0.0
0.0
N3
0.7716
0.7716
0.0
0.0
-0.0681
-0.0421
0.7716
-0.7716
0.0
0.0
0.0681
0.0421
-0.7716
-0.7716
0.0
0.0
-0.0681
-0.0421
-0.7716
0.7716
0.0
0.0
0.0681
0.0421

a The z axis is along the carbonyl bond with O positive. The x-axis is in-plane and directed such that the N has a positive x coordinate. The origin is at the carbonyl carbon.

b Monopole positions relative to the atomic centers (R. W. Woody, J. Chem. Phys. 49, 4797-4806 (1968)).

c Monopole charges in 10-10 esu. Calculated from INDO/S (J. Ridley and M. Zerner, Theor. Chim. Acta 32, 111-134 (1973)) wave functions for N-methylacetamide.



Transition Parameters for the np* Transition in the Amide Groupa


Transition
E (eV)b
Ñy (A-1)
(r x Ñ)x (BM)c
(r x Ñ)z (BM)c
Bandwidth (nm)
np*
5.6357
0.0
0.0904
-0.9094
10.5

a Because of the plane of symmetry, the x and z components of the Ñ matrix element and the y component of the (r x Ñ) matrix element are zero.

b Corresponds to the standard wavelength for the np* transition in polypeptides, 220 nm. Note that INDO/S (J. Ridley and M. Zerner, Theor. Chim. Acta 32, 111-134 (1973)) significantly underestimates the np* transition energy, placing the transition at about 300 nm.

c Calculated from INDO/S (J. Ridley and M. Zerner, Theor. Chim. Acta 32, 111-134 (1973)) wave functions for N-methylacetamide.